HL_8PNN_121

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8PNN|1|AR|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_121 not in the Motif Atlas

Homologous match to HL_8P9A_126

Geometric discrepancy: 0.0404

The information below is about HL_8P9A_126

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8PNN|1|AR|U|640
8PNN|1|AR|C|641
8PNN|1|AR|U|642
8PNN|1|AR|U|643
8PNN|1|AR|G|644
8PNN|1|AR|A|645
8PNN|1|AR|A|646
8PNN|1|AR|A|647
8PNN|1|AR|C|648
8PNN|1|AR|A|649

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain DC

60S ribosomal protein L28

Chain DG

60S ribosomal protein L32