HL_8PNN_131

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8PNN|1|AR|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_131 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.0727

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PNN|1|AR|C|1076
8PNN|1|AR|U|1077
8PNN|1|AR|U|1078
8PNN|1|AR|A|1079
8PNN|1|AR|A|1080
8PNN|1|AR|U|1081
8PNN|1|AR|U|1082
8PNN|1|AR|G|1083

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L5

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29