HL_8PNN_132

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8PNN|1|AR|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_132 not in the Motif Atlas

Homologous match to HL_8P9A_137

Geometric discrepancy: 0.0335

The information below is about HL_8P9A_137

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8PNN|1|AR|G|1126
8PNN|1|AR|G|1127
8PNN|1|AR|U|1128
8PNN|1|AR|A|1129
8PNN|1|AR|A|1130
8PNN|1|AR|G|1131
8PNN|1|AR|C|1132

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10