HL_8PNN_141

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8PNN|1|AR|U|1606, 8PNN|1|AR|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_141 not in the Motif Atlas

Homologous match to HL_8P9A_146

Geometric discrepancy: 0.0499

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8PNN|1|AR|G|1599
8PNN|1|AR|U|1600
8PNN|1|AR|U|1601
8PNN|1|AR|A|1602
8PNN|1|AR|A|1603
8PNN|1|AR|G|1604
8PNN|1|AR|A|1605
8PNN|1|AR|U|1606
8PNN|1|AR|U|1607
8PNN|1|AR|C|1608

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain CZ

60S ribosomal protein L25

Chain DI

60S ribosomal protein L34-A