HL_8PNN_143

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8PNN|1|AR|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_143 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.0605

The information below is about HL_8P9A_148

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8PNN|1|AR|G|1680
8PNN|1|AR|U|1681
8PNN|1|AR|U|1682
8PNN|1|AR|A|1683
8PNN|1|AR|U|1684
8PNN|1|AR|C|1685
8PNN|1|AR|U|1686
8PNN|1|AR|U|1687
8PNN|1|AR|U|1688

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain CW

60S ribosomal protein L22-A