HL_8PNN_159

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8PNN|1|AR|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_159 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0728

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8PNN|1|AR|C|2616
8PNN|1|AR|U|2617
8PNN|1|AR|G|2618
8PNN|1|AR|G|2619
8PNN|1|AR|G|2620
8PNN|1|AR|G|2621
8PNN|1|AR|C|2622
8PNN|1|AR|G|2623
8PNN|1|AR|G|2624

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain DD

60S ribosomal protein L29