HL_8PNN_161

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_161 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.0668

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PNN|1|AR|A|2673
8PNN|1|AR|A|2674
8PNN|1|AR|C|2675
8PNN|1|AR|A|2676
8PNN|1|AR|G|2677
8PNN|1|AR|A|2678
8PNN|1|AR|A|2679
8PNN|1|AR|A|2680
8PNN|1|AR|U|2681

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CM

Large ribosomal subunit protein uL5B

Chain sM

Suppressor protein STM1