HL_8PNN_174

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8PNN|1|AR|A|3243, 8PNN|1|AR|A|3244, 8PNN|1|AR|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_174 not in the Motif Atlas

Homologous match to HL_8CRE_068

Geometric discrepancy: 0.1082

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8PNN|1|AR|C|3240
8PNN|1|AR|G|3241
8PNN|1|AR|G|3242
8PNN|1|AR|A|3243
8PNN|1|AR|A|3244
8PNN|1|AR|A|3245
8PNN|1|AR|G|3246
8PNN|1|AR|G|3247

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CQ

60S ribosomal protein L16-A