HL_8PNN_179

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_179 not in the Motif Atlas

Homologous match to HL_8P9A_185

Geometric discrepancy: 0.0505

The information below is about HL_8P9A_185

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8PNN|1|AS|G|88
8PNN|1|AS|G|89
8PNN|1|AS|U|90
8PNN|1|AS|G|91
8PNN|1|AS|A|92
8PNN|1|AS|C|93

Current chains

Chain AS

5S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L7-A

Chain CL

60S ribosomal protein L10

Chain CU

60S ribosomal protein L20-A