HL_8PNN_181
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8PNN|1|AT|A|80, 8PNN|1|AT|C|84, 8PNN|1|AT|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_181 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.0552
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|AT|U|69
8PNN|1|AT|G|70
8PNN|1|AT|A|71
8PNN|1|AT|A|72
8PNN|1|AT|U|73
8PNN|1|AT|U|74
8PNN|1|AT|G|75
8PNN|1|AT|C|76
8PNN|1|AT|A|77
8PNN|1|AT|G|78
8PNN|1|AT|A|79
8PNN|1|AT|A|80
8PNN|1|AT|U|81
8PNN|1|AT|U|82
8PNN|1|AT|C|83
8PNN|1|AT|C|84
8PNN|1|AT|G|85
8PNN|1|AT|U|86
8PNN|1|AT|G|87
8PNN|1|AT|A|88
8PNN|1|AT|A|89
Current chains
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain AI
- 60S ribosomal protein L35-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- 60S ribosomal protein L26-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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