HL_8PNN_199

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8PNN|1|sR|G|765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_199 not in the Motif Atlas

Homologous match to HL_8P9A_206

Geometric discrepancy: 0.0535

The information below is about HL_8P9A_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8PNN|1|sR|U|764
8PNN|1|sR|G|765
8PNN|1|sR|U|766
8PNN|1|sR|U|767
8PNN|1|sR|C|768
8PNN|1|sR|A|769
8PNN|1|sR|A|770
8PNN|1|sR|A|771
8PNN|1|sR|G|772

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A