HL_8PNN_201

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_201 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.055

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PNN|1|sR|A|829
8PNN|1|sR|U|830
8PNN|1|sR|U|831
8PNN|1|sR|U|832
8PNN|1|sR|U|833
8PNN|1|sR|G|834
8PNN|1|sR|U|835
8PNN|1|sR|U|836
8PNN|1|sR|G|837
8PNN|1|sR|G|838
8PNN|1|sR|U|839
8PNN|1|sR|U|840
8PNN|1|sR|U|841
8PNN|1|sR|C|842
8PNN|1|sR|U|843

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A