HL_8PNN_215
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8PNN|1|sR|U|1557, 8PNN|1|sR|U|1558, 8PNN|1|sR|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_215 not in the Motif Atlas
- Homologous match to HL_8P9A_222
- Geometric discrepancy: 0.0691
- The information below is about HL_8P9A_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8PNN|1|sR|A|1550
8PNN|1|sR|U|1551
8PNN|1|sR|U|1552
8PNN|1|sR|G|1553
8PNN|1|sR|U|1554
8PNN|1|sR|A|1555
8PNN|1|sR|A|1556
8PNN|1|sR|U|1557
8PNN|1|sR|U|1558
8PNN|1|sR|A|1559
8PNN|1|sR|U|1560
8PNN|1|sR|U|1561
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain c8
- 40S ribosomal protein S18-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d9
- Small ribosomal subunit protein uS14A
- Chain sM
- Suppressor protein STM1
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