HL_8PPK_007

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_007 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3848

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8PPK|1|2|G|377
8PPK|1|2|U|378
8PPK|1|2|C|379
8PPK|1|2|G|380
8PPK|1|2|C|381
8PPK|1|2|C|382
8PPK|1|2|G|383
8PPK|1|2|U|384
8PPK|1|2|G|385
8PPK|1|2|C|386
8PPK|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11