HL_8PPK_010

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

8PPK|1|2|A|464

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|C|459
8PPK|1|2|A|460
8PPK|1|2|U|461
8PPK|1|2|OMC|462
8PPK|1|2|C|463
8PPK|1|2|A|464
8PPK|1|2|A|465
8PPK|1|2|G|466
8PPK|1|2|G|467
8PPK|1|2|A2M|468
8PPK|1|2|A|469
8PPK|1|2|G|470

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6