HL_8PPK_034

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8PPK|1|2|G|1849

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPK_034 not in the Motif Atlas

Homologous match to HL_8C3A_227

Geometric discrepancy: 0.1143

The information below is about HL_8C3A_227

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8PPK|1|2|G|1847
8PPK|1|2|U|1848
8PPK|1|2|G|1849
8PPK|1|2|MA6|1850
8PPK|1|2|MA6|1851
8PPK|1|2|C|1852

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

60S ribosomal protein L41

Chain p

Eukaryotic translation initiation factor 1