HL_8PPL_002

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_002 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3219

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8PPL|1|A2|C|69
8PPL|1|A2|G|70
8PPL|1|A2|G|71
8PPL|1|A2|C|72
8PPL|1|A2|C|73
8PPL|1|A2|G|74
8PPL|1|A2|G|75
8PPL|1|A2|U|76
8PPL|1|A2|A|77
8PPL|1|A2|C|78
8PPL|1|A2|A|79
8PPL|1|A2|G|80

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6