HL_8PPL_010

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

8PPL|1|A2|A|464

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|C|459
8PPL|1|A2|A|460
8PPL|1|A2|U|461
8PPL|1|A2|OMC|462
8PPL|1|A2|C|463
8PPL|1|A2|A|464
8PPL|1|A2|A|465
8PPL|1|A2|G|466
8PPL|1|A2|G|467
8PPL|1|A2|A2M|468
8PPL|1|A2|A|469
8PPL|1|A2|G|470

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6