HL_8PPL_013

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

8PPL|1|A2|U|573

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2179

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PPL|1|A2|A|569
8PPL|1|A2|C|570
8PPL|1|A2|U|571
8PPL|1|A2|PSU|572
8PPL|1|A2|U|573
8PPL|1|A2|A|574
8PPL|1|A2|A|575
8PPL|1|A2|A2M|576
8PPL|1|A2|U|577
8PPL|1|A2|C|578
8PPL|1|A2|C|579
8PPL|1|A2|U|580
8PPL|1|A2|U|581

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24