HL_8PPL_015

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

8PPL|1|A2|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_015 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2703

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8PPL|1|A2|U|820
8PPL|1|A2|G|821
8PPL|1|A2|PSU|822
8PPL|1|A2|U|823
8PPL|1|A2|C|824
8PPL|1|A2|A|825
8PPL|1|A2|A|826
8PPL|1|A2|A|827
8PPL|1|A2|G|828

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24