HL_8PPL_019

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_019 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0712

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PPL|1|A2|C|994
8PPL|1|A2|G|995
8PPL|1|A2|A|996
8PPL|1|A2|A|997
8PPL|1|A2|A|998
8PPL|1|A2|G|999

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain Aa

40S ribosomal protein S26