HL_8PPL_028

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_028 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.1708

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8PPL|1|A2|C|1417
8PPL|1|A2|C|1418
8PPL|1|A2|C|1419
8PPL|1|A2|G|1420
8PPL|1|A2|A|1421
8PPL|1|A2|G|1422

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

Small ribosomal subunit protein eS19