HL_8PPL_031

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8PPL|1|A2|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|G|1613
8PPL|1|A2|A|1614
8PPL|1|A2|U|1615
8PPL|1|A2|U|1616
8PPL|1|A2|G|1617
8PPL|1|A2|C|1618
8PPL|1|A2|A|1619
8PPL|1|A2|A|1620
8PPL|1|A2|U|1621
8PPL|1|A2|U|1622
8PPL|1|A2|A|1623
8PPL|1|A2|U|1624
8PPL|1|A2|PSU|1625
8PPL|1|A2|C|1626

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein S15

Chain AS

Small ribosomal subunit protein uS13

Chain AT

Small ribosomal subunit protein eS19

Chain Ad

40S ribosomal protein S29