HL_8PPL_032

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

8PPL|1|A2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_032 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.2946

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8PPL|1|A2|G|1658
8PPL|1|A2|U|1659
8PPL|1|A2|C|1660
8PPL|1|A2|A|1661
8PPL|1|A2|U|1662
8PPL|1|A2|A|1663
8PPL|1|A2|A|1664
8PPL|1|A2|G|1665
8PPL|1|A2|C|1666

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AT

Small ribosomal subunit protein eS19

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29