HL_8PPL_034

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8PPL|1|A2|G|1849

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_034 not in the Motif Atlas

Homologous match to HL_8C3A_227

Geometric discrepancy: 0.0958

The information below is about HL_8C3A_227

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8PPL|1|A2|G|1847
8PPL|1|A2|U|1848
8PPL|1|A2|G|1849
8PPL|1|A2|MA6|1850
8PPL|1|A2|MA6|1851
8PPL|1|A2|C|1852

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41

Chain Ip

Eukaryotic translation initiation factor 1