HL_8PPL_035

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8PPL|1|Iw|C|16, 8PPL|1|Iw|G|17, 8PPL|1|Iw|G|18, 8PPL|1|Iw|A|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_035 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2038

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8PPL|1|Iw|C|13
8PPL|1|Iw|A|14
8PPL|1|Iw|G|15
8PPL|1|Iw|C|16
8PPL|1|Iw|G|17
8PPL|1|Iw|G|18
8PPL|1|Iw|A|19
8PPL|1|Iw|A|20
8PPL|1|Iw|G|21

Current chains

Chain Iw

Met-tRNAi(Met)

Nearby chains

Chain Ir

Eukaryotic translation initiation factor 2 subunit 1