HL_8PPL_036
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GCCCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PPL_036 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1332
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8PPL|1|Iw|G|30
8PPL|1|Iw|C|31
8PPL|1|Iw|C|32
8PPL|1|Iw|C|33
8PPL|1|Iw|A|34
8PPL|1|Iw|U|35
8PPL|1|Iw|T6A|36
8PPL|1|Iw|A|37
8PPL|1|Iw|C|38
Current chains
- Chain Iw
- Met-tRNAi(Met)
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AP
- 40S ribosomal protein S15
- Chain AQ
- 40S ribosomal protein S16
- Chain Ip
- Eukaryotic translation initiation factor 1
- Chain Ir
- Eukaryotic translation initiation factor 2 subunit 1
- Chain Is
- Eukaryotic translation initiation factor 2 subunit 2
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