HL_8PPL_037

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAUCG(1MA)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PPL_037 not in the Motif Atlas

Homologous match to HL_1YFG_003

Geometric discrepancy: 0.2437

The information below is about HL_1YFG_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|Iw|G|52
8PPL|1|Iw|A|53
8PPL|1|Iw|U|54
8PPL|1|Iw|C|55
8PPL|1|Iw|G|56
8PPL|1|Iw|1MA|57
8PPL|1|Iw|A|58
8PPL|1|Iw|A|59
8PPL|1|Iw|C|60

Current chains

Chain Iw

Met-tRNAi(Met)

Nearby chains

Chain Ir

Eukaryotic translation initiation factor 2 subunit 1