HL_8PV1_056

3D structure

PDB id

8PV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV1_056 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1851

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PV1|1|C1|A|2632
8PV1|1|C1|A|2633
8PV1|1|C1|C|2634
8PV1|1|C1|A|2635
8PV1|1|C1|G|2636
8PV1|1|C1|A|2637
8PV1|1|C1|A|2638
8PV1|1|C1|A|2639
8PV1|1|C1|U|2640

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LJ

Putative ribosomal protein