HL_8PV1_078
3D structure
- PDB id
- 8PV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- CGUCCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV1_078 not in the Motif Atlas
- Geometric match to HL_5TBW_185
- Geometric discrepancy: 0.14
- The information below is about HL_5TBW_185
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_83767.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
8PV1|1|C4|C|36
8PV1|1|C4|G|37
8PV1|1|C4|U|38
8PV1|1|C4|C|39
8PV1|1|C4|C|40
8PV1|1|C4|G|41
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Cz
- rRNA-processing protein
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
Coloring options: