HL_8PV2_009

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGUAAAUUUC

Length

10 nucleotides

Bulged bases

8PV2|1|C1|G|297, 8PV2|1|C1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_009 not in the Motif Atlas

Homologous match to HL_8C3A_009

Geometric discrepancy: 0.0677

The information below is about HL_8C3A_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8PV2|1|C1|G|296
8PV2|1|C1|G|297
8PV2|1|C1|U|298
8PV2|1|C1|A|299
8PV2|1|C1|A|300
8PV2|1|C1|A|301
8PV2|1|C1|U|302
8PV2|1|C1|U|303
8PV2|1|C1|U|304
8PV2|1|C1|C|305

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LN

Ribosomal protein L15

Chain La

60S ribosomal protein L28-like protein

Chain Li

60S ribosomal protein L36