HL_8PV2_010

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0823

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV2|1|C1|A|350
8PV2|1|C1|G|351
8PV2|1|C1|U|352
8PV2|1|C1|G|353
8PV2|1|C1|A|354
8PV2|1|C1|U|355

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LC

60S ribosomal protein L4-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

Ribosomal protein eL39