HL_8PV2_046

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_046 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1871

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8PV2|1|C1|G|2073
8PV2|1|C1|G|2074
8PV2|1|C1|U|2075
8PV2|1|C1|A|2076
8PV2|1|C1|C|2077

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain Cb

Zinc finger domain-containing protein

Chain LR

Ribosomal protein L19