HL_8PV2_055

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGUGCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV2_055 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3777

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8PV2|1|C1|U|2590
8PV2|1|C1|G|2591
8PV2|1|C1|U|2592
8PV2|1|C1|G|2604
8PV2|1|C1|C|2605
8PV2|1|C1|A|2606

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cg

Ribosome biogenesis regulatory protein