HL_8PV2_065
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PV2_065 not in the Motif Atlas
- Homologous match to HL_5TBW_065
- Geometric discrepancy: 0.1034
- The information below is about HL_5TBW_065
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8PV2|1|C1|C|2983
8PV2|1|C1|G|2984
8PV2|1|C1|A|2985
8PV2|1|C1|G|2986
8PV2|1|C1|A|2987
8PV2|1|C1|G|2988
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CN
- Eukaryotic translation initiation factor 6
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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