HL_8PV3_015

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(OMG)UCUUGAAAC(A2M)CG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV3|1|C1|C|626
8PV3|1|C1|OMG|627
8PV3|1|C1|U|628
8PV3|1|C1|C|629
8PV3|1|C1|U|630
8PV3|1|C1|U|631
8PV3|1|C1|G|632
8PV3|1|C1|A|633
8PV3|1|C1|A|634
8PV3|1|C1|A|635
8PV3|1|C1|C|636
8PV3|1|C1|A2M|637
8PV3|1|C1|C|638
8PV3|1|C1|G|639

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain LC

60S ribosomal protein L4-like protein

Chain La

60S ribosomal protein L28-like protein

Chain Le

60S ribosomal protein L32-like protein