HL_8PV3_050

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8PV3|1|C1|G|2334, 8PV3|1|C1|A|2335, 8PV3|1|C1|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV3_050 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0808

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8PV3|1|C1|G|2332
8PV3|1|C1|G|2333
8PV3|1|C1|G|2334
8PV3|1|C1|A|2335
8PV3|1|C1|A|2336
8PV3|1|C1|C|2337
8PV3|1|C1|G|2338
8PV3|1|C1|G|2339
8PV3|1|C1|G|2340
8PV3|1|C1|C|2341

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CL

Putative GTP binding protein

Chain LB

60S ribosomal protein L3-like protein

Chain Le

60S ribosomal protein L32-like protein