HL_8PV5_052

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8PV5|1|C1|G|2334, 8PV5|1|C1|A|2335, 8PV5|1|C1|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV5_052 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0976

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8PV5|1|C1|G|2332
8PV5|1|C1|G|2333
8PV5|1|C1|G|2334
8PV5|1|C1|A|2335
8PV5|1|C1|A|2336
8PV5|1|C1|C|2337
8PV5|1|C1|G|2338
8PV5|1|C1|G|2339
8PV5|1|C1|G|2340
8PV5|1|C1|C|2341

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CL

Putative GTP binding protein

Chain LB

60S ribosomal protein L3-like protein

Chain Le

60S ribosomal protein L32-like protein