HL_8PV6_003

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_003 not in the Motif Atlas

Homologous match to HL_8C3A_003

Geometric discrepancy: 0.1903

The information below is about HL_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8PV6|1|C1|C|91
8PV6|1|C1|G|92
8PV6|1|C1|G|93
8PV6|1|C1|C|94
8PV6|1|C1|G|95
8PV6|1|C1|A|96
8PV6|1|C1|G|97

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein