HL_8PV6_005

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

8PV6|1|C1|C|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0883

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8PV6|1|C1|C|188
8PV6|1|C1|U|189
8PV6|1|C1|G|190
8PV6|1|C1|G|191
8PV6|1|C1|A|192
8PV6|1|C1|A|193
8PV6|1|C1|C|194
8PV6|1|C1|G|195

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein