HL_8PV6_011

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.0803

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV6|1|C1|U|375
8PV6|1|C1|G|376
8PV6|1|C1|A|377
8PV6|1|C1|A|378
8PV6|1|C1|A|379
8PV6|1|C1|A|380

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LP

60S ribosomal protein l17-like protein