HL_8PV6_013

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8PV6|1|C1|C|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_013 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1504

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8PV6|1|C1|C|534
8PV6|1|C1|U|535
8PV6|1|C1|C|536
8PV6|1|C1|C|537
8PV6|1|C1|G|538
8PV6|1|C1|G|539

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein