HL_8PV6_038

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CACUUCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_038 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1389

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8PV6|1|C1|C|1739
8PV6|1|C1|A|1740
8PV6|1|C1|C|1741
8PV6|1|C1|U|1742
8PV6|1|C1|U|1743
8PV6|1|C1|C|1744
8PV6|1|C1|U|1745
8PV6|1|C1|G|1746

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein

Chain Lk

60S ribosomal protein L38-like protein