HL_8PV6_046

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8PV6|1|C1|G|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_046 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0707

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV6|1|C1|A|2127
8PV6|1|C1|G|2128
8PV6|1|C1|A|2129
8PV6|1|C1|A|2130
8PV6|1|C1|A|2131
8PV6|1|C1|G|2132
8PV6|1|C1|U|2133

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15