HL_8PV6_049

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8PV6|1|C1|G|2334, 8PV6|1|C1|A|2335, 8PV6|1|C1|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_049 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1058

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8PV6|1|C1|G|2332
8PV6|1|C1|G|2333
8PV6|1|C1|G|2334
8PV6|1|C1|A|2335
8PV6|1|C1|A|2336
8PV6|1|C1|C|2337
8PV6|1|C1|G|2338
8PV6|1|C1|G|2339
8PV6|1|C1|G|2340
8PV6|1|C1|C|2341

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CL

Putative GTP binding protein

Chain LB

60S ribosomal protein L3-like protein

Chain Le

60S ribosomal protein L32-like protein