HL_8PV6_050

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV6_050 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2468

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8PV6|1|C1|C|2433
8PV6|1|C1|U|2434
8PV6|1|C1|U|2435
8PV6|1|C1|C|2436
8PV6|1|C1|G|2437
8PV6|1|C1|G|2438

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CW

Pre-rRNA-processing protein RIX1

Chain Lr

Ribosomal protein