HL_8PV7_018

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8PV7|1|C1|U|719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV7_018 not in the Motif Atlas

Geometric match to HL_5J7L_175

Geometric discrepancy: 0.0728

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8PV7|1|C1|C|717
8PV7|1|C1|U|718
8PV7|1|C1|U|719
8PV7|1|C1|C|720
8PV7|1|C1|G|721
8PV7|1|C1|G|722

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein