HL_8PV7_031

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV7_031 not in the Motif Atlas

Homologous match to HL_5TBW_030

Geometric discrepancy: 0.0965

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PV7|1|C1|C|1386
8PV7|1|C1|G|1387
8PV7|1|C1|U|1388
8PV7|1|C1|G|1389
8PV7|1|C1|A|1390
8PV7|1|C1|G|1391

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32-like protein

Chain Lq

Putative 60S ribosomal protein