HL_8PV8_050

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV8_050 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1933

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8PV8|1|C1|C|2433
8PV8|1|C1|U|2434
8PV8|1|C1|U|2435
8PV8|1|C1|C|2436
8PV8|1|C1|G|2437
8PV8|1|C1|G|2438

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Lt

Ribosomal protein