HL_8PV8_055

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

U(OMU)U(OMU)G(OMU)GA

Length

8 nucleotides

Bulged bases

8PV8|1|C1|U|2684, 8PV8|1|C1|G|2689

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PV8_055 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2504

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8PV8|1|C1|U|2682
8PV8|1|C1|OMU|2683
8PV8|1|C1|U|2684
8PV8|1|C1|OMU|2688
8PV8|1|C1|G|2689
8PV8|1|C1|OMU|2690
8PV8|1|C1|G|2691
8PV8|1|C1|A|2692

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29